Research Group Bioinformatics Core

Key publications

  1. Borja Gomez Ramos, Jochen Ohnmacht, Nikola de Lange, Elena Valceschini, Aurelien Ginolhac, Marie Catillon, Daniele Ferrante, Aleksandar Rakovic, Rashi Halder, Francois Massart, Giuseppe Arena, Paul Antony, Silvia Bolognin, Christine Klein, Roland Krause, Marcel H Schulz, Thomas Sauter, Rejko Kruger, Lasse Sinkkonen, Multiomics analysis identifies novel facilitators of human dopaminergic neuron differentiation., Embo Reports (2024), doi:10.1038/s44319-023-00024-2
  2. Danielle Welter, Philippe Rocca-Serra, Valentin Grouès, Nirmeen Sallam, François Ancien, Abetare Shabani, Saeideh Asariardakani, Pinar Alper, Soumyabrata Ghosh, Tony Burdett, Susanna Assunta Sansone, Wei Gu, Venkata Satagopam, The Translational Data Catalog – discoverable biomedical datasets, Scientific Data (2023), doi:10.1038/s41597-023-02258-0
  3. Christophe M Capelle, Severine Cire, Fanny Hedin, Maxime Hansen, Lukas Pavelka, Kamil Grzyb, Dimitrios Kyriakis, Oliver Hunewald, Maria Konstantinou, Dominique Revets, Vera Tslaf, Taina M Marques, Clarissa P C Gomes, Alexandre Baron, Olivia Domingues, Mario Gomez, Ni Zeng, Fay Betsou, Patrick May, Alexander Skupin, Antonio Cosma, Rudi Balling, Rejko Kruger, Markus Ollert, Feng Q Hefeng, Early-to-mid stage idiopathic Parkinson’s disease shows enhanced cytotoxicity and differentiation in CD8 T-cells in females., Nature Communications (2023), doi:10.1038/s41467-023-43053-0
  4. International League Against Epilepsy Consortium on Complex Epilepsies, GWAS meta-analysis of over 29,000 people with epilepsy identifies 26 risk loci and subtype-specific genetic architecture., Nature Genetics (2023), doi:10.1038/s41588-023-01485-w
  5. Piotr Gawron, Ewa Smula, Reinhard Schneider, Marek Ostaszewski, Exploration and comparison of molecular mechanisms across diseases using MINERVA Net., Protein Science (2023), doi:10.1002/pro.4565
  6. Francesco Delogu, Benoit J. Kunath, Pedro M. Queirós, Rashi Halder, Laura A. Lebrun, Phillip B. Pope, Patrick May, Stefanie Widder, Emilie E.L. Muller, Paul Wilmes, Forecasting the dynamics of a complex microbial community using integrated meta-omics, Nature Ecology & Evolution (2023), doi:10.1038/s41559-023-02241-3
  7. Oskar Hickl, Pedro Queirós, Paul Wilmes, Patrick May, Anna Heintz-Buschart, binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets., Briefings In Bioinformatics (2022), doi:10.1093/bib/bbac431
  8. Miroslav Kratochvíl, Laurent Heirendt, St Elmo Wilken, Taneli Pusa, Sylvain Arreckx, Alberto Noronha, Marvin van Aalst, Venkata P Satagopam, Oliver Ebenhöh, Reinhard Schneider, Christophe Trefois, Wei Gu, COBREXA.jl: constraint-based reconstruction and exascale analysis, Bioinformatics (2022), doi:https://doi.org/10.1093/bioinformatics/btab782
  9. Paul Wilmes, Camille Martin-Gallausiaux, Marek Ostaszewski, Velma T E Aho, Polina V Novikova, Cedric C Laczny, Jochen G Schneider, The gut microbiome molecular complex in human health and disease., Cell Host & Microbe (2022), doi:10.1016/j.chom.2022.08.016
  10. Johanna Kruger, Julian Schubert, Josua Kegele, Audrey Labalme, Miaomiao Mao, Jacqueline Heighway, Guiscard Seebohm, Pu Yan, Mahmoud Koko, Kezban Aslan-Kara, Hande Caglayan, Bernhard J Steinhoff, Yvonne G Weber, Pascale Keo-Kosal, Samuel F Berkovic, Michael S Hildebrand, Steven Petrou, Roland Krause, Patrick May, Gaetan Lesca, Snezana Maljevic, Holger Lerche, Loss-of-function variants in the KCNQ5 gene are implicated in genetic generalized epilepsies., Ebiomedicine (2022), doi:10.1016/j.ebiom.2022.104244

Share this