Key publications

1. Alper P, Dĕd V, Herzinger S, Grouès V, Peter S, Lebioda J, Ebermann L, Popleteeva M, Barry ND, Welter D, Ghosh S, Becker R, Schneider R, Gu W, Trefois C, Satagopam V. DS-PACK: Tool assembly for the end-to-end support of controlled access human data sharing. Sci Data. 2024 May 15;11(1):501. doi: 10.1038/s41597-024-03326-9. PMID: 38750048; PMCID: PMC11096168.
2. Vega C, Ostaszewski M, Grouès V, Schneider R, Satagopam V. BioKC: a collaborative platform for curation and annotation of molecular interactions. Database (Oxford). 2024 Mar 27;2024:baae013. doi: 10.1093/database/baae013. PMID: 38537198; PMCID: PMC10972550.
3. Pavelka L, Rawal R, Sapienza S, Klucken J, Pauly C, Satagopam V, Krüger R. Genetically stratified Parkinson’s disease with freezing of gait is related to specific pattern of cognitive impairment and non-motor dominant endophenotype. Front Aging Neurosci. 2024 Oct 11;16:1479572. doi: 10.3389/fnagi.2024.1479572. PMID: 39463818; PMCID: PMC11502444.
4. Hemedan AA, Satagopam V, Schneider R, Ostaszewski M. Cohort-specific boolean models highlight different regulatory modules during Parkinson’s disease progression. iScience. 2024 Sep 14;27(10):110956. doi: 10.1016/j.isci.2024.110956. PMID: 39429779; PMCID: PMC11489052.
5. Acencio ML, Ostaszewski M, Mazein A, Rosenstiel P, Aden K, Mishra N, Andersen V, Sidiropoulos P, Banos A, Filia A, Rahmouni S, Finckh A, Gu W, Schneider R, Satagopam V. The SYSCID map: a graphical and computational resource of molecular mechanisms across rheumatoid arthritis, systemic lupus erythematosus and inflammatory bowel disease. Front Immunol. 2023 Nov 1;14:1257321. doi: 10.3389/fimmu.2023.1257321. PMID: 38022524; PMCID: PMC10646502.
6. Welter D, Rocca-Serra P, Grouès V, Sallam N, Ancien F, Shabani A, Asariardakani S, Alper P, Ghosh S, Burdett T, Sansone SA, Gu W, Satagopam V. The Translational Data Catalog – discoverable biomedical datasets. Sci Data. 2023 Jul 20;10(1):470. doi: 10.1038/s41597-023-02258-0. PMID: 37474618; PMCID: PMC10359386.
7. Vega C, Gawron P, Lebioda J, Grouès V, Matyjaszczyk P, Pauly C, Smula E, Krüger R, Schneider R, Satagopam V. Smart Scheduling (SMASCH): multi-appointment scheduling system for longitudinal clinical research studies. JAMIA Open. 2022 May 25;5(2):ooac038. doi: 10.1093/jamiaopen/ooac038. PMID: 35651522; PMCID: PMC9150077.
8. Gu W, Hasan S, Rocca-Serra P, Satagopam VP. Road to effective data curation for translational research. Drug Discov Today. 2021 Mar;26(3):626-630. doi: 10.1016/j.drudis.2020.12.007. Epub 2020 Dec 15. PMID: 33338655.
9. Satagopam V, Gu W, Eifes S, Gawron P, Ostaszewski M, Gebel S, Barbosa-Silva A, Balling R, Schneider R. Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data. 2016 Jun;4(2):97-108. doi: 10.1089/big.2015.0057. PMID: 27441714; PMCID: PMC4932659.
10. Neumann B, Walter T, Hériché JK, Bulkescher J, Erfle H, Conrad C, Rogers P, Poser I, Held M, Liebel U, Cetin C, Sieckmann F, Pau G, Kabbe R, Wünsche A, Satagopam V, Schmitz MH, Chapuis C, Gerlich DW, Schneider R, Eils R, Huber W, Peters JM, Hyman AA, Durbin R, Pepperkok R, Ellenberg J. Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature. 2010 Apr 1;464(7289):721-7. doi: 10.1038/nature08869. PMID: 20360735; PMCID: PMC3108885.