Research Group Clinical and Translational Informatics

Key publications

  1. Balaur I, Welter D, Rougny A, Inau ET, Mazein A, Ghosh S, Schneider R, Waltemath D, Ostaszewski M, Satagopam V. FAIR assessment of Disease Maps fosters open science and scientific crowdsourcing in systems biomedicine. Sci Data. 2025 May 23;12(1):851. doi: 10.1038/s41597-025-05147-w. PMID: 40410181; PMCID: PMC12102143.
  2. Kratochvíl M, Wilken SE, Ebenhöh O, Schneider R, Satagopam VP. COBREXA 2: tidy and scalable construction of complex metabolic models. Bioinformatics. 2025 Feb 4;41(2):btaf056. doi: 10.1093/bioinformatics/btaf056. PMID: 39921902; PMCID: PMC11842047.
  3. Pavelka L, Rawal R, Sapienza S, Klucken J, Pauly C, Satagopam V, Krüger R. Genetically stratified Parkinson’s disease with freezing of gait is related to specific pattern of cognitive impairment and non-motor dominant endophenotype. Front Aging Neurosci. 2024 Oct 11;16:1479572. DOI: 10.3389/fnagi.2024.1479572
  4. Hemedan AA, Satagopam V, Schneider R, Ostaszewski M. Cohort-specific boolean models highlight different regulatory modules during Parkinson’s disease progression. iScience. 2024 Sep 14;27(10):110956. DOI: 10.1016/j.isci.2024.110956
  5. Alper P, Dĕd V, Herzinger S, Grouès V, Peter S, Lebioda J, Ebermann L, Popleteeva M, Barry ND, Welter D, Ghosh S, Becker R, Schneider R, Gu W, Trefois C, Satagopam V. DS-PACK: Tool assembly for the end-to-end support of controlled access human data sharing. Sci Data. 2024 May 15;11(1):501. doi: 10.1038/s41597-024-03326-9
  6. Welter D, Rocca-Serra P, Grouès V, Sallam N, Ancien F, Shabani A, Asariardakani S, Alper P, Ghosh S, Burdett T, Sansone SA, Gu W, Satagopam V. The Translational Data Catalog – discoverable biomedical datasets. Sci Data.2023 Jul 20;10(1):470. doi: 10.1038/s41597-023-02258-0
  7. Vega C, Gawron P, Lebioda J, Grouès V, Matyjaszczyk P, Pauly C, Smula E, Krüger R, Schneider R, Satagopam V. Smart Scheduling (SMASCH): multi-appointment scheduling system for longitudinal clinical research studies.JAMIA Open. 2022 May 25;5(2):ooac038.  doi: 10.1093/jamiaopen/ooac038
  8. Gu W, Hasan S, Rocca-Serra P, Satagopam VP. Road to effective data curation for translational research. Drug Discov Today. 2021 Mar;26(3):626-630. Doi: 10.1016/j.drudis.2020.12.007
  9. Satagopam V, Gu W, Eifes S, Gawron P, Ostaszewski M, Gebel S, Barbosa-Silva A, Balling R, Schneider R. Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data. 2016 Jun;4(2):97-108. doi: 10.1089/big.2015.0057
  10. Neumann B, Walter T, Hériché JK, Bulkescher J, Erfle H, Conrad C, Rogers P, Poser I, Held M, Liebel U, Cetin C, Sieckmann F, Pau G, Kabbe R, Wünsche A, Satagopam V, et al., Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature. 2010 Apr 1;464(7289):721-7. DOI: 10.1038/nature08869

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